| Paketname | glam2 |
| Beschreibung | gapped protein motifs from unaligned sequences |
| Archiv/Repository | Offizielles Debian Archiv squeeze (main) |
| Version | 1064-1 |
| Sektion | science |
| Priorität | optional |
| Installierte Größe | 460 Byte |
| Hängt ab von | libc6 (>= 2.7-1), libfftw3-3 |
| Empfohlene Pakete | |
| Paketbetreuer | Debian-Med Packaging Team |
| Quelle | |
| Paketgröße | 240456 Byte |
| Prüfsumme MD5 | 9b9bae53978bb7951f5b5328af904183 |
| Prüfsumme SHA1 | 9675ddb3513a85e65bf51982d0b3a772d5e85584 |
| Prüfsumme SHA256 | 89b988846dd03eab855774b6b819874947ebe7183e1726f425ea7c49d5f149de |
| Link zum Herunterladen | glam2_1064-1_i386.deb |
| Ausführliche Beschreibung | GLAM2 is a software package for finding motifs in sequences, typically
amino-acid or nucleotide sequences. A motif is a re-occurring sequence
pattern: typical examples are the TATA box and the CAAX prenylation motif. The
main innovation of GLAM2 is that it allows insertions and deletions in motifs.
.
The package includes these programs:
glam2: discovering motifs shared by a set of sequences;
glam2scan: finding matches, in a sequence database, to a motif discovered
by glam2;
glam2format: converting glam2 motifs to standard alignment formats;
glam2mask: masking glam2 motifs out of sequences, so that weaker motifs
can be found;
glam2-purge: removing highly similar members of a set of sequences.
.
In this package, the fast Fourier algorithm (FFT) was enabled for glam2.
.
If you use GLAM2, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey
(2008) Discovering sequence motifs with arbitrary insertions and deletions,
PLoS Computational Biology (in press).
|