| Paketname | gmap |
| Beschreibung | spliced and SNP-tolerant alignment for mRNA and short reads |
| Archiv/Repository | Offizielles Debian Archiv squeeze (non-free) |
| Version | 2010-07-21-1 |
| Sektion | non-free/science |
| Priorität | optional |
| Installierte Größe | 8144 Byte |
| Hängt ab von | libc6 (>= 2.7), perl |
| Empfohlene Pakete | |
| Paketbetreuer | Debian Med Packaging Team |
| Quelle | |
| Paketgröße | 2427990 Byte |
| Prüfsumme MD5 | 9892cca6315fabf2e57dd4aa6afcb885 |
| Prüfsumme SHA1 | 37763e71c3b08fe1c85854ed12e8688cb3aa8f0f |
| Prüfsumme SHA256 | 2b595d96b546f35ba1e9563394dcec0fd94174a4acf24d39c341c0e7f429e791 |
| Link zum Herunterladen | gmap_2010-07-21-1_i386.deb |
| Ausführliche Beschreibung | This package contains the programs GMAP and GSNAP as well as
utilities to manage genome databases in GMAP/GSNAP format.
GMAP (Genomic Mapping and Alignment Program) is a tool for aligning
EST, mRNA and cDNA sequences.
GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for
aligning single-end and paired-end transcriptome reads.
Both tools can use a database of
* known splice sites and identify novel splice sites.
* known single-nucleotide polymorphisms (SNPs).
GSNAP can align bisulfite-treated DNA.
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